Nextflow workflow report

[trusting_angela]

Workflow execution completed successfully!
Run times
06-Aug-2025 12:32:09 - 06-Aug-2025 12:56:34 (duration: 24m 25s)
  801 succeeded  
  0 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run epi2me-labs/wf-single-cell -r master -profile singularity --fastq JS_ES1_allpass_adapter_trimmed.fastq.cleancombined.fastq --ref_genome_dir /mnt/scratch/users/jps558/staging/hg38/ --kit '3prime:v3' --expected_cells 1 --matrix_min_genes 1 --matrix_min_cells 1 --matrix_max_mito 50 --out_dir result_trim_minimum
CPU-Hours
1.4
Launch directory
/mnt/scratch/users/jps558/Stenning_Data_Analysis/2024-JS-ssCC/CallingCards_ONT/E1_barcodeFollowUpTest
Work directory
/mnt/scratch/users/jps558/Stenning_Data_Analysis/2024-JS-ssCC/CallingCards_ONT/E1_barcodeFollowUpTest/work
Project directory
/users/jps558/.nextflow/assets/epi2me-labs/wf-single-cell
Script name
main.nf
Script ID
f303485400b2845f3d68c8b5e5e242d6
Workflow session
9fa751cf-6d21-4602-ab68-d430e5bf537f
Workflow repository
https://github.com/epi2me-labs/wf-single-cell, revision master (commit hash 41a58829a07a5a4c00c7575087e1307316c6e773)
Workflow profile
singularity
Nextflow version
version 23.04.2, build 5871 (08-06-2023 09:33 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)